PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00845g00031.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 406aa    MW: 46118.2 Da    PI: 7.8047
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00845g00031.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.36.4e-09129149526
                               --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                C+ f++ G C++Gd+C FaHg
  Peaxi162Scf00845g00031.1 129 VCSEFRK-GNCSRGDNCEFAHG 149
                               7******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.65E-5123153IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-6124150IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.45125151IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-6128151IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-7129149IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.287159183IPR000571Zinc finger, CCCH-type
SMARTSM003562.4159182IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MEGLCAEQHH HKFHPSHQLY LNKKSLRDID IPPRKLLSRR SNLSVDPVSD MFMDSPKSDS  60
DTLFQKFLPY NSLDEDDDPY SADHFRMYEF KVRRCTRSRS HDWTDCPFAH PGEKARRRDP  120
RRYHYSGTVC SEFRKGNCSR GDNCEFAHGV FECWLHPTRY RTEACKDGKN CKRKVCFFAH  180
TPRQLRVLPP SCHETGSNSP RNSPVEKKYR NMNQCCVFCH SVSASPTSTL MGMSHMSPPM  240
SPSLSPPLSP ANKSQFSPMS RYSDRFGSVE SSCGMGQLDP TGLMSYKDAF NELVSSLEAM  300
NVNHEANSSS AGVTNYDGKL PWLDVNFNNN NNNYYDDQQQ FLMSPSTPSP SPVSSSRTKY  360
YARDFPASSS MMSFGEENNN NATTSKYYND NGLGGPDFGW VNDLLT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009789499.10.0PREDICTED: zinc finger CCCH domain-containing protein 61-like
RefseqXP_016489908.10.0PREDICTED: zinc finger CCCH domain-containing protein 61-like
SwissprotQ9ZWA15e-92C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLM1D6B10.0M1D6B1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000828140.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA105952125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.13e-83C3H family protein